Prevalence of Salmonella associated with chick mortality at hatching and their susceptibility to antimicrobial agents

The prevalence of Salmonella associated mortality at hatching was investigated in three hatcheries in Jos, central Nigeria. Their susceptibility to antimicrobial agents was also evaluated. S. Kentucky and S. Hadar were isolated. While half of the isolates were from internal organs, 26.7% came from meconial swabs of dead-in-shell embryos, 17.8% from intestinal samples and 4.4% from egg shells. S. Hadar is known to colonise only the gut and is classified as non-invasive, but in this study 82% were obtained from internal organs which suggests that infections with this serotype may also cause invasive disease. Antimicrobial susceptibility tests showed a high prevalence of antimicrobial resistance in the study area with complete resistance to gentamycin, enrofloxacin, nalidixic acid, tetracycline and streptomycin and substantial resistance to triple sulphur and ciprofloxacin. Six multiple resistance profiles were recorded with a high level of multiple resistance to quinolones. Quinolone resistance has implications for veterinary and human therapy as their misuse in poultry could lead to the emergence of resistant animal and zoonotic pathogens.     

Decision support system for greenhouse seedling production

A decision support system was developed for greenhouse seedling production by incorporating tomato seedling growth models to attain the desired dry weight of tomato seedlings at the time of transplant. Tomato seedlings were produced in a greenhouse to develop growth models, which were divided into emergence, and post emergence. These mathematical models were used to develop a decision making process in the form of a DSS. The DSS was developed in visual basic 6.0. The DSS has two modules long term planning and daily temperature management. The former module deals with the long term planning of seedling production and advice on average temperature and supplementary light depending on users input, while the other module deals with daily temperature management and advice on hour to hour for temperature control strategies as per the prevailing environmental and greenhouse conditions, and required temperature conditions to achieve the predefined target of seedling growth in terms of days required for seedling production. The developed algorithms attempt to maximum use of ambient conditions and minimum use of supplementary expensive energy. The feature not only hardens the seedlings but also reduces the cost of seedlings hardening.     

Shade Effects on Growth and Development of Cacao Following Two Years of Continuous Dry Season Irrigation

ABSTRACT

The deployment of plantain shade and irrigation (5- and 10-day) intervals) for enhancing survival, field establishment, flowering and pod production of field-grown cacao seedlings in the dry season was investigated. The effects of dry season irrigation was profound on cacao growth, field establishment (over 90% seedling survival) and development, flowering and pod production. For the non-irrigated moderately shaded cacao, about 30% of the transplanted seedlings survived and the achievable percent survival from the various shade-irrigation combinations ranged from 47–90%. Open sun in combination with 5-day irrigation interval had best results in term of growth (root and shoot development and biomass accumulation) and establishment, flowering and pod production. Lower values of air and soil temperatures were obtained for combination of irrigation and shade regimes (dense and moderate) and higher soil moisture contents. The shade-irrigation combinations ameliorated microclimate and enhanced growth and development, seedling survival, root and shoot development, advanced flowering and promoted uniform fruiting/pod production and total bean yield. The effects of dry season irrigation at 5- or 10-day intervals was profound on cacao growth, field establishment (over 90% seedling survival), flowering and pod production. Irrigated unshaded (open sun) cacao had best results in term of growth (root and shoot development and biomass accumulation) and establishment, flowering and pod production. The achievable percent survival from the various shade-irrigation combinations ranged from 47–90%. The drip irrigation strategy adopted ameliorated dry season terminal drought (hydrothermal stresses) and promoted cacao growth, survival and flower/pod production.     

Genome-wide association study of grain iron and zinc concentration in common bean (Phaseolus vulgaris)

Common bean is one of the widely consumed food security crop in Africa, Asia and South America. It is a rich source of protein, minerals and micronutrients. High genotype by environment interaction is one of the main challenge in breeding for high grain micronutrient concentration. The objective of this study was to estimate SNP markers associated with grain Fe and Zn concentration using 289 common bean genotypes and 11,480 SNP markers. The study revealed that 43 quantitative trait loci (QTLs) were associated with grain Fe and Zn concentration. Five quantitative trait nucleotides (QTNs), that is, QTN Fe_1.1, QTN Fe_6.3, QTN Fe_6.5, QTN Fe_10.3 and QTN Fe_11.6 were detected both at Haramaya and Melkassa locations. Two of the markers, that is, QTN Fe_6.3 and QTN Fe_6.5, were located on chromosome 06 while QTN Fe_1.1, QTN Fe_10.3 and QTN Fe_ 11.6 were residing on chromosomes 01, 10 and 11, respectively. Among these, QTN Fe_11.6 had a large and positive consistent effect across locations. The five stable QTNs along with the potential candidate genes could be used for Fe biofortification through marker assisted selection.     

What is the ecological footprint of aquaculture after 5 decades of competition between mangrove conservation and shrimp farm development?

1. Among the several threats to the conservation of mangrove ecosystems in most South Asian countries, shrimp farming is predominant. Since the introduction of shrimp farming in Sri Lanka in the 1980s, mangroves on the island’s north-western coast have been continually cleared to create new shrimp farms, leading to a decline in the social-ecological services provided by the mangrove ecosystems.
2. Using aerial (1973) and satellite (1996–2020) images, this study assessed areal changes in mangroves and shrimp farms in the Pambala-Chilaw lagoon complex and Ihala Mahawewa, as well as the ecological footprint of shrimp farming in the study area.
3. Mangroves around the Chilaw lagoon had decreased in areal extent by 45% from 1973 to 2020 of which 92% of this change was attributed to shrimp farming. There was, however, a decrease in the areal extent of shrimp farms from 2001 to 2020, and a corresponding increase in mangroves from 2006 to 2020.
4. The ecological footprint of shrimp farming was assessed by comparing the expected surface ratios with those recorded for shrimp farms with mangroves and surface water bodies in the study area from 1973 to 2020. The results showed that the current shrimp farming was unsustainable (i.e. high ecological footprint).
5. While the results support the current view that there is cause for cautious optimism with mangrove conservation (as evidenced by an increase in mangrove areal extent), it also reveals that semi-intensive shrimp farming in Sri Lanka and probably other similar tropical countries is unsustainable.
6. If immediate actions such as effective regulation of shrimp farming activities and mangrove restoration are not taken, the mangrove ecosystem will continue to decline.

     

Phenotypic assessment of genetic gain from selection for improved drought tolerance in semi-tropical maize populations

Most maize production across the globe is rain-fed, and production is set to be negatively impacted as duration and occurrence of droughts increases due to climate change. Development of water-deficit tolerant maize germplasm has been a major focus for most breeding programmes. Here, we sought to assess the genetic gain for grain yield in two maize populations developed for drought tolerance at CIMMYT by evaluating their cycle progeny through hybrid performance. Inbreds derived from different cycles of the Drought Tolerant Population (DTP) and La Posta Sequia (LPS) were mated to a tester (CML550), and resulting hybrids were evaluated under managed water-deficit stress and well-watered conditions. The difference in yield between water-deficit and well-watered treatments was 27% and 36% for the DTP and LPS, respectively. Genetic gain for grain yield across cycles for the two populations was confirmed in the study. Genetic gain was observed for both treatments indicating that selection for water-deficit stress tolerance simultaneously improves grain yield in well-watered conditions. The DTP population had a genetic gain of 0.07 t ha⁻¹ cycle⁻¹, while the LPS had 0.16 t ha⁻¹ cycle⁻¹ under water-deficit conditions. Significant genetic gain was also observed in the well-watered treatments for both populations. Anthesis to silking interval was significantly reduced under water-deficit stress conditions in both populations. Plant and ear height were reduced in the LPS population in both treatments, while no reductions were observed for the trait in the DTP population. Potential water-deficit stress tolerance donor lines with yields comparable to commercial check varieties were identified.     

Habitat partitioning among three predatory fish in a temperate reservoir

The diversity of predatory species plays a key role in ecosystem functioning but our understanding of the mechanisms underlying their coexistence is limited, particularly in freshwater ecosystems. Northern pike Esox lucius, European perch Perca fluviatilis and pikeperch Sander lucioperca are three widespread predatory species in European lakes, where they often coexist. As potential competitors, we hypothesised that partitioning habitat is a determinant of species coexistence. This was tested by quantifying the variability of their habitat use in tracking adult individuals in the Bariousses reservoir (France, 86.6 ha, mean depth 7.1 m). Specifically, we investigated their distribution along the littoral–pelagic and depth axes along the daily cycle and across seasons. From littoral to pelagic waters were first found pike, then perch and finally pikeperch. Pike was the closest to the surface while pikeperch was the deepest. This general pattern was, however, variable across seasons with the three species located in the upper layer in summer during reservoir stratification. Individuals were more evenly distributed along the littoral–pelagic axis and closer to the bottom when water was mixing (autumn, winter). In summer, perch used more intensively in the pelagic zone during the daytime. Other species did not show any diel change of habitats. Our results highlighted that species coexistence is associated with habitat partitioning among these three predators, with perch showing a more variable behaviour regarding habitat characteristics. Now more than ever, in the context of global change which modifies habitats, it is of crucial importance to understand the coexistence mechanisms of species that shape ecosystems.     

Assessing the suitability of stress tolerant early-maturing maize (Zea mays) inbred lines for hybrid development using combining ability effects and DArTseq markers

Identification of hybrids for commercialization is crucial for sustainable maize production in sub-Saharan Africa (SSA). One hundred and ninety test crosses, 10 tester × tester crosses + 10 hybrid checks were evaluated across 11 environments, 2017 to 2019. Inheritance of grain yield under Striga infestation, optimal and across environments was influenced by additive genetic action, but there was greater influence of nonadditive gene action under drought stress conditions. Nine, seven and two inbreds had significant and positive general combining ability (GCA) effects for grain yield under Striga-infested, optimal and drought stress environments, respectively, and would contribute high grain yield to their progenies. Heterotic grouping methods based on specific and GCA, GCA effects of multiple traits and DArTseq markers classified the inbreds into five, three and two heterotic groups, respectively, across research conditions. The DArTseq markers method that classified the inbred lines into two major heterotic groups and was one of the most efficient methods should be adopted for practical purposes in maize breeding programmes in SSA. Hybrids TZEI 7 × TZdEI 352, TZEI 1238 × TZEI 7 and TZEI 1252 × TZEI 7 had outstanding grain yield under contrasting environments and should be tested on-farm for commercialization in SSA.     

Phylogeography and conservation gaps of Musa balbisiana Colla genetic diversity revealed by microsatellite markers

Genetic Resources and Crop Evolution - Collection and storage of crop wild relative (CWR) germplasm is crucial for preserving species genetic diversity and crop improvement. Nevertheless, much of...     

Selecting recombinants to stack high protein with high oleic acid and low linoleic acid in soybean (Glycine max)

Soybean accounts for over a quarter of the world's oilseed consumption and over 70% of the world's protein meal consumption. The separate development of high oleic, low linolenic acid (HOLL) soybean and high-protein (HP) soybean means that no soybean cultivar on the market has an optimal fatty acid profile and increased protein. The objective of this study was to develop and evaluate high protein, high oleic acid, and low linolenic acid (HP-HOLL) soybean. A five-gene stack was created using a two-phase forward breeding scheme and marker-assisted selection method. Forty-six HP-HOLL lines from three genetic backgrounds were grown in six environments in the Southeast United States. Although genotype-by-environment interaction was significant for seed composition traits, lines met the >75% and <3% cutoffs for oleic acid and linolenic acid, respectively, and met or exceeded the protein concentration of the HP parent. No negative interaction could be detected between the HP and HOLL traits. Additionally, yield testing in four environments indicated yield parity for some lines, suggesting HP and HOLL soybean cultivars with high yield could be selected.